rs4796817 chr17:78806566 T>C

Sequence
cgtgccgtggctgcccaagcttcc[T/C]gctgcagaggtgccgggcacccca
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) MS-1 (Small cell lung carcinoma)
ASB for transcription factors
ETS1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ETS1_HUMAN 3.21 -3.55 1.7·10-41.00 1.00 -2.03 Concordant
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Motif analysis

ETS1_HUMAN Concordant
ETS1_HUMAN pic

Genetic associations

GRASP alzheimers disease,  autism with high iq,  fasting insulin,  hdl cholesterol,  height,  homa-b,  homa-ir,  triglycerides
GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pancreas,  Testis,  Thyroid

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