rs4797100 chr18:3138555 A>G
- Sequence
ccttgcagtgttttttatgataac[A/G]ttatcttttgtgtgtctgctgtct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- KDM1A_HUMAN ARI1B_HUMAN MTG16_HUMAN HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | -2.28 | 2.50 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | -2.35 | 2.66 | 1.00 | n/a | n/a | |||
| MTG16_HUMAN | -2.98 | 2.22 | 1.33 | n/a | n/a | |||
| HTF4_HUMAN | -2.35 | 2.46 | 1.00 | n/a | No Hit | |||
| TAL1_HUMAN | -2.38 | 2.55 | 1.25 | -0.01 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP college completion, parkinsons disease, parkinsons disease (pd), resistance to kuru in aged women despite likely exposure, rheumatoid arthritis