rs4797103 chr18:3261766 G>T

Sequence
tcgcgccccgcctgggtcaaaggg[G/T]accccaaatcctcggccgatcgcg
ASB in cell types
K562 (myelogenous leukemia) breast tumor CD14+ monocytes
ASB for transcription factors
ESR1_HUMAN HTF4_HUMAN TYY1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN n/a 4.19 1.003.8·10-7 2.00 0.47 Weak Concordant
HTF4_HUMAN -3.73 3.62 1.008.9·10-6 1.00 n/a No Hit
TYY1_HUMAN -1.39 2.31 1.002.6·10-5 1.50 n/a No Hit
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Motif analysis

ESR1_HUMAN Weak Concordant
ESR1_HUMAN pic

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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