rs4798808 chr18:9403794 G>A
- Sequence
acaacgtttgaccaggaaagctgt[G/A]cttttgctgaaggtgtccacacag
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM02610 (Lymphoblastoid Cell Lines) K562 (myelogenous leukemia)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.00 | 1.30 | 1.13 | n/a | n/a | |||
| CTCF_HUMAN | 0.47 | 1.14 | 1.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg