rs4801243 chr19:58002439 A>C
- Sequence
cccccttgaaggcggcgcagcagg[A/C]tcggggtctgcccgcctggggcgt
- ASB in cell types
- HEK293 (embryonic kidney) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ZBT26_HUMAN ZN335_HUMAN GCR_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | n/a | 3.55 | 1.50 | n/a | No Hit | |||
| ZN335_HUMAN | n/a | 2.18 | 2.00 | 2.94 | Concordant | |||
| GCR_HUMAN | 0.01 | 1.52 | 1.00 | n/a | No Hit | |||
| BRD2_HUMAN | 0.03 | 1.06 | 1.94 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood