rs4801551 chr19:58055386 C>G

Sequence
ccttctcggagcgccccctaaccg[C/G]gcctccggaccttgcttcccggct
ASB in cell types
thyroid gland
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.38 0.18 3.5·10-71.00 1.37 -1.66 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP fasting insulin,  homa-b,  homa-ir,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Pituitary,  Thyroid

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