rs4801810 chr19:49897791 G>A
- Sequence
gggagccaggggctccgtgaggag[G/A]aaaaccagagggaggcagattctc
- ASB in cell types
- CD14+ monocytes HUVEC-C (HUVEC, umbilical vein endothelial cells) BEAS-2B (bronchial epithelium) L1236 (Hodgkin lymphoma)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN TF65_HUMAN RELB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.75 | n/a | 2.00 | -1.34 | Weak Concordant | |||
| GCR_HUMAN | 1.46 | -0.13 | 1.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.50 | -0.04 | 1.85 | 0.21 | Weak Discordant | |||
| RELB_HUMAN | 3.21 | n/a | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.32 | -1.95 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
