rs4802506 chr19:48799066 T>C
- Sequence
gctgactcatctgtgtccccagct[T/C]ctgccagcacagggcctggccctc
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) HEK293 (embryonic kidney)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN ZIC2_HUMAN SMAD3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | n/a | 3.24 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.43 | 3.27 | 2.00 | n/a | n/a | |||
| ZIC2_HUMAN | n/a | 1.14 | 1.50 | n/a | No Hit | |||
| SMAD3_HUMAN | n/a | 1.83 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Whole_Blood