rs4802768 chr19:51092366 T>A
- Sequence
cacttggtgtctggcttctgtcca[T/A]ccttccaacctcatcactgcattg
- ASB in cell types
- HEK293 (embryonic kidney) SK-BR-3 (breast adenocarcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN189_HUMAN NFIB_HUMAN AP2C_HUMAN ZN600_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN189_HUMAN | -1.93 | 2.23 | 1.00 | -3.10 | Discordant | |||
| NFIB_HUMAN | n/a | 2.66 | 3.00 | 3.07 | Concordant | |||
| AP2C_HUMAN | n/a | 2.82 | 2.00 | n/a | No Hit | |||
| ZN600_HUMAN | -2.17 | 2.52 | 1.00 | n/a | n/a | |||
| SP7_HUMAN | -1.96 | 2.42 | 1.50 | n/a | No Hit |
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Motif analysis
