rs4803206 chr19:39125881 T>C
- Sequence
ggcgcgagggcgcggagttccagg[T/C]cgagcagttaggccgcgagcgact
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- ANDR_HUMAN BRD2_HUMAN TF65_HUMAN ZBT8A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.36 | -4.33 | 2.00 | 0.19 | Weak Discordant | |||
| BRD2_HUMAN | 0.25 | 1.40 | 1.95 | n/a | n/a | |||
| TF65_HUMAN | 2.46 | -0.24 | 1.83 | n/a | No Hit | |||
| ZBT8A_HUMAN | -1.42 | 2.35 | 3.00 | n/a | n/a | |||
| HCFC1_HUMAN | 2.35 | -1.58 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Cells_Cultured_fibroblasts, Pancreas, Spleen, Testis, Thyroid, Whole_Blood