rs4803744 chr19:44720973 A>G

Sequence
aacagacatttctcaaaagaagac[A/G]tacaatggccaacaagtatatgaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN IKZF2_HUMAN MEF2B_HUMAN ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -1.94 2.62 1.001.3·10-4 1.00 n/a n/a
IKZF2_HUMAN n/a 2.69 1.004.8·10-4 1.00 n/a n/a
MEF2B_HUMAN -2.52 2.62 1.007.1·10-3 1.00 -1.19 Weak Discordant
ELF1_HUMAN n/a 2.40 1.000.02 1.00 n/a No Hit
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Motif analysis

MEF2B_HUMAN Weak Discordant
MEF2B_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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