rs4805029 chr19:33176913 A>G
- Sequence
ggctccgcccgctccgtgcagccc[A/G]agcttccggtctcagtctcagctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) primary B-CLL cells macrophages
- ASB for transcription factors
- FOXK2_HUMAN JUN_HUMAN CEBPB_HUMAN P66B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.99 | 0.24 | 1.25 | n/a | No Hit | |||
| JUN_HUMAN | 1.09 | 0.37 | 1.93 | n/a | No Hit | |||
| CEBPB_HUMAN | -1.42 | 1.78 | 3.00 | n/a | No Hit | |||
| P66B_HUMAN | 3.30 | n/a | 2.00 | n/a | n/a | |||
| CDK8_HUMAN | 1.15 | 0.06 | 1.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid, Whole_Blood