rs4805859 chr19:33176423 T>C

Sequence
acccagaaggggtcagtgagaaac[T/C]agggaggggagggccttgcctgct
ASB in cell types
GM19239 (male B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.01 1.20 1.007.9·10-3 1.19 n/a No Hit
ANDR_HUMAN 2.01 -1.12 0.031.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  salmonella-induced pyroptosis,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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