rs4806884 chr19:984554 C>G

Sequence
gaattacatcagcgcctgggagct[C/G]cagcggaaggtgcggcggtgcggt
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia) LNCaP (prostate carcinoma) liver
ASB for transcription factors
NRF1_HUMAN RFOX2_HUMAN EP400_HUMAN GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN 1.94 -0.22 1.2·10-51.00 1.67 n/a No Hit
RFOX2_HUMAN 2.58 -1.66 2.3·10-41.00 1.25 n/a n/a
EP400_HUMAN 1.42 n/a 1.7·10-31.00 2.00 n/a n/a
GABPA_HUMAN 1.85 -1.33 5.9·10-31.00 1.61 n/a No Hit
TYY1_HUMAN 1.59 -0.95 0.021.00 1.21 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  mitral annular calcium,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Vagina,  Whole_Blood

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