rs4807087 chr19:6516183 G>A
- Sequence
ggaagggcctggagcggacagcag[G/A]ggaagtgggcggggcctggggaga
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) macrophages form periferal blood HL-60 (acute myeloid leukemia) H929 (plasma cell myeloma)
- ASB for transcription factors
- SPI1_HUMAN ETS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.42 | 1.26 | 1.44 | 1.10 | Weak Concordant | |||
| ETS1_HUMAN | -1.33 | 2.01 | 1.00 | 7.27 | Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, microalbuminuria, obesity with early age of onset (age >2), rheumatoid arthritis, schizophrenia