rs4807162 chr19:1897583 A>G
- Sequence
gggattacaggcgtgagccaccgc[A/G]cccgggtgacactccatttttgac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN ANDR_HUMAN NCOR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -0.29 | 2.27 | 1.62 | n/a | No Hit | |||
| ANDR_HUMAN | -1.48 | 2.61 | 2.00 | n/a | No Hit | |||
| NCOR1_HUMAN | -0.74 | 1.78 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood