rs4807358 chr19:2900520 C>T
- Sequence
aactgagtctggacttctcgtgcc[C/T]gttcgggagaaggacgcgggaggc
- ASB in cell types
- 22RV1 (prostate carcinoma) BEAS-2B (bronchial epithelium) CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN GCR_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.26 | 3.58 | 1.50 | 0.28 | Weak Concordant | |||
| GCR_HUMAN | 0.19 | 1.07 | 1.00 | -0.10 | Weak Discordant | |||
| STAT1_HUMAN | -1.08 | 1.95 | 2.00 | n/a | No Hit |
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Motif analysis
