rs4807422 chr19:3210835 T>C
- Sequence
ctgggagccatggagggctgtggg[T/C]agaagagcgacaggccctgactca
- ASB in cell types
- erythroid progenitors HEK293 (embryonic kidney) CD34+ stem cells-derived erythroblasts K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN KDM1A_HUMAN ZN341_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.17 | 0.49 | 1.38 | n/a | No Hit | |||
| STAG1_HUMAN | 1.82 | -1.18 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 0.28 | 1.04 | 1.67 | n/a | n/a | |||
| ZN341_HUMAN | 2.37 | -4.60 | 2.00 | -0.56 | Weak Concordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid