rs4807518 chr19:3849323 A>C
- Sequence
cagctttgtctccacctggtggac[A/C]ccccacctaagaggacagtggagg
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) SYO-1(Biphasic synovial sarcoma) stem and progenitor cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.15 | -1.04 | 1.35 | -1.91 | Weak Concordant | |||
| RAD21_HUMAN | 3.14 | -5.21 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | 2.59 | -2.46 | 1.00 | n/a | n/a |
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Motif analysis
