rs4808161 chr19:18832079 C>G

Sequence
ctcggtccggctggcgccggggcg[C/G]gcggtttggtcctttccgggcgcg
ASB in cell types
MDA-MB-231 (breast adenocarcinoma) breast tumor
ASB for transcription factors
BRD2_HUMAN BRD4_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD2_HUMAN 0.02 1.64 1.001.7·10-7 2.00 n/a n/a
BRD4_HUMAN 0.12 1.82 1.000.02 2.10 n/a n/a
JUN_HUMAN 0.40 1.20 1.000.05 2.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Testis

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