rs4808304 chr19:14690110 T>C
- Sequence
gctgtgctgcgcggcgcggcgcgg[T/C]gcggcacggcacggtgggagtgtc
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) neural cell HEK293 (embryonic kidney)
- ASB for transcription factors
- GABP1_HUMAN SP130_HUMAN SP1_HUMAN GATD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 1.83 | -3.17 | 3.67 | n/a | n/a | |||
| SP130_HUMAN | 2.40 | -2.08 | 1.00 | n/a | n/a | |||
| SP1_HUMAN | 1.71 | -1.18 | 1.33 | -0.85 | Weak Concordant | |||
| GATD1_HUMAN | 2.36 | -2.38 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 1.28 | -0.08 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood