rs4808306 chr19:14690250 T>C
- Sequence
gaacagctccgcctgtgtgagggg[T/C]ttcctccctgcgatcagccggtgg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- SP2_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | 2.36 | n/a | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | -4.79 | 2.02 | 2.50 | 3.49 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood