rs4808479 chr19:16258599 C>T

Sequence
ggtcacagataaggccgctgggcc[C/T]ggctatcggcaggaaacatcttgg
ASB in cell types
primary endothelial colony-forming cells CD34+ hematopoietic stem cells-derived proerythroblasts
ASB for transcription factors
TAL1_HUMAN GATA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TAL1_HUMAN 0.54 2.57 1.006.3·10-8 1.50 n/a No Hit
GATA1_HUMAN 2.47 0.38 2.7·10-41.00 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  hypertension (early onset hypertension),  premature ovarian failure
GTEx eQTL Adipose_Subcutaneous,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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