rs4808724 chr19:17947944 C>G
- Sequence
aggggagttccgtgcgcgcccagc[C/G]ggccccgcgtgcgttgccaggacg
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) MCF7 (Invasive ductal breast carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- TF65_HUMAN ZN143_HUMAN CDN1B_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.02 | -0.31 | 1.80 | n/a | No Hit | |||
| ZN143_HUMAN | n/a | 3.73 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.27 | 1.61 | 2.25 | n/a | n/a | |||
| ANDR_HUMAN | 2.09 | 0.51 | 1.83 | n/a | No Hit | |||
| TYY1_HUMAN | 2.07 | 0.36 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood