rs4808725 chr19:17948014 G>T
- Sequence
gccggtcgctcactgcgcctgcgc[G/T]ggggtgctcgccatttgcgccggg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) CD4+ T cells from blood MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ZN143_HUMAN TF65_HUMAN JUN_HUMAN BMI1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | -2.21 | 3.09 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.76 | -3.85 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.19 | 1.80 | 2.40 | n/a | No Hit | |||
| BMI1_HUMAN | n/a | 3.08 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood