rs4808913 chr19:19062609 T>G
- Sequence
atcctgaagatgaagggtgagtca[T/G]agaacagagtggcttcgggggagg
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- SMCA4_HUMAN MEIS2_HUMAN IKZF1_HUMAN REQU_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | 1.49 | 0.04 | 1.18 | n/a | n/a | |||
| MEIS2_HUMAN | 3.32 | n/a | 2.00 | -2.95 | Concordant | |||
| IKZF1_HUMAN | 2.55 | -0.98 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 2.14 | 0.16 | 1.40 | n/a | n/a | |||
| ARI1B_HUMAN | 1.40 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid