rs4809280 chr20:63232784 C>G
- Sequence
gggctcattcgtgtggcacccaca[C/G]gcagtttcagggcgtggactttcc
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) EA.hy 926 (human umbilical vein endothelial cell line) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) RMG-1
- ASB for transcription factors
- CDN1B_HUMAN ARI1A_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | 0.17 | 2.25 | 3.00 | n/a | n/a | |||
| ARI1A_HUMAN | -1.04 | 2.12 | 2.00 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.42 | 0.51 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid, Vagina, Whole_Blood