rs4809559 chr20:63435060 G>C
- Sequence
cgctacattcctaccagcaggggg[G/C]gcggtgtccacacatcctcactac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) neural cell Jurkat (T-cells) spleen
- ASB for transcription factors
- CTCF_HUMAN KDM6A_HUMAN CLOCK_HUMAN SUMO2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.58 | 1.18 | 1.55 | 5.88 | Concordant | |||
| KDM6A_HUMAN | n/a | 2.95 | 3.00 | n/a | n/a | |||
| CLOCK_HUMAN | -3.41 | 1.90 | 2.00 | n/a | No Hit | |||
| SUMO2_HUMAN | -1.32 | 1.93 | 2.00 | n/a | n/a |
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Motif analysis
