rs4809607 chr20:46965756 G>A

Sequence
ccttgcttgccttggctcccgtcc[G/A]ccgggctgttccctgcacgtacga
ASB in cell types
HepG2 (hepatoblastoma) breast tumor 22RV1 (prostate carcinoma) LHSAR (prostate epithelial cells)
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN NFIB_HUMAN SUH_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.92 1.30 1.002.7·10-7 2.11 n/a No Hit
ESR1_HUMAN 1.15 1.36 1.003.2·10-3 2.97 n/a No Hit
NFIB_HUMAN -1.85 2.11 1.008.9·10-3 1.25 2.80 Concordant
SUH_HUMAN n/a 2.30 1.000.05 1.00 n/a No Hit
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Motif analysis

NFIB_HUMAN Concordant
NFIB_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  ldl cholesterol,  nicotine initiation (smoking),  rheumatoid arthritis,  simpson-angus scale,  triglycerides
GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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