rs4809833 chr20:51326428 A>T
- Sequence
gaggacagcctgtgcttaacagtg[A/T]cccctggtggccatgagacctgat
- ASB in cell types
- T47D (invasive ductal carcinoma) KMS-11 (Plasma cell myeloma) PC9 (lung adenocarcinoma) adrenal gland
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.16 | 0.63 | 1.68 | -0.93 | Weak Concordant | |||
| RAD21_HUMAN | 1.29 | 0.46 | 1.31 | n/a | n/a | |||
| SMC1A_HUMAN | 2.04 | 0.09 | 1.60 | n/a | n/a |
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Motif analysis
