rs4810316 chr20:41393111 C>A
- Sequence
aacaggctttccgggctttgtgcc[C/A]ccagccagacacagtgtcctggga
- ASB in cell types
- liver LNCaP C4-2B (prostate carcinoma) MDA-MB-134 (invasive lobular breast carcinoma) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- ZFX_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.71 | 1.91 | 1.00 | n/a | No Hit | |||
| CREB1_HUMAN | -1.21 | 0.93 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, college completion, ldl cholesterol, salmonella-induced pyroptosis, total cholesterol, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid