rs4810494 chr20:46312806 G>T
- Sequence
gacgggaccgcagggagggggagg[G/T]gactacttggggaggggactccat
- ASB in cell types
- K562 (myelogenous leukemia) TTC-1240 (Rhabdoid tumor of the kidney) HEK293 (embryonic kidney) PC9 (lung adenocarcinoma)
- ASB for transcription factors
- SUZ12_HUMAN MAZ_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SUZ12_HUMAN | 0.11 | 2.17 | 1.25 | n/a | n/a | |||
| MAZ_HUMAN | 2.94 | -5.27 | 2.00 | -2.41 | Concordant | |||
| NFIC_HUMAN | 2.82 | -5.34 | 2.00 | n/a | No Hit |
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Motif analysis
