rs4811071 chr20:50464326 G>C
- Sequence
ggcggagggaggacaggaggggcc[G/C]ctttgccggactggggatcagtgt
- ASB in cell types
- esophagus squamous epithelium adrenal gland spleen upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN SMC1A_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.26 | -0.14 | 1.35 | -2.75 | Concordant | |||
| SMC1A_HUMAN | 2.58 | -1.78 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.74 | -0.18 | 2.06 | n/a | n/a | |||
| STAG1_HUMAN | 1.38 | -1.25 | 1.50 | n/a | n/a |
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Motif analysis
