rs4824 chr1:155689149 T>G
- Sequence
aggcagcgtgtgtcggtcgcctag[T/G]ctggagaactagtcctcgactcac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN MED26_HUMAN STAT1_HUMAN SMAD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.94 | -5.27 | 2.00 | n/a | No Hit | |||
| MED26_HUMAN | 1.90 | -1.11 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.32 | 0.16 | 1.80 | n/a | No Hit | |||
| SMAD2_HUMAN | 1.77 | -0.03 | 1.17 | -2.31 | Concordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood