rs4908540 chr1:6206036 A>G
- Sequence
cctggggaaggtggatgccggaag[A/G]ggcgtcgcctgcgggtcacccaga
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ARI1B_HUMAN MTA3_HUMAN SPT5H_HUMAN RFOX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 3.63 | n/a | 1.33 | n/a | n/a | |||
| MTA3_HUMAN | 3.81 | -3.69 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 3.19 | n/a | 1.50 | n/a | n/a | |||
| RFOX2_HUMAN | 3.56 | n/a | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 3.17 | -2.91 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood