rs4912091 chr1:19425089 T>C
- Sequence
tgtgtcaattattttcctaggact[T/C]ccctccctcacatggctacaaaat
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- SPI1_HUMAN SP130_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 3.21 | -3.35 | 1.00 | -3.64 | Concordant | |||
| SP130_HUMAN | 2.67 | -2.41 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Nerve_Tibial, Testis, Thyroid