rs4912314 chr1:56502805 C>T

Sequence
agctagctactcaagggcatggat[C/T]gtgttgagtcatccctgttttcag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EMSY_HUMAN NF2L1_HUMAN BACH1_HUMAN HINFP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EMSY_HUMAN n/a 1.66 1.002.4·10-13 2.00 n/a n/a
NF2L1_HUMAN n/a 2.26 1.004.2·10-3 3.00 1.18 Weak Concordant
BACH1_HUMAN -2.11 2.53 1.000.02 1.00 n/a No Hit
HINFP_HUMAN n/a 2.49 1.000.03 1.00 n/a No Hit
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Motif analysis

NF2L1_HUMAN Weak Concordant
NF2L1_HUMAN pic

Genetic associations

EMBL-EBI waist-to-hip ratio adjusted for body mass index
GRASP coronary artery disease (cad),  infant head circumference,  ldl cholesterol,  major depressive disorder,  sickle cell anemia severity,  variant creutzfeldt-jakob disease

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