rs496321 chr11:95153468 T>C

Sequence
actttattgacgaggaaagtagga[T/C]tggtgagacaaaataagtccctga
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) TF-1 (erythroleukemia)
ASB for transcription factors
TAL1_HUMAN MTA2_HUMAN ARI1B_HUMAN MTG8R_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TAL1_HUMAN -0.36 1.72 1.001.5·10-4 2.07 1.15 Weak Concordant
MTA2_HUMAN -0.54 1.30 1.002.0·10-3 1.83 n/a n/a
ARI1B_HUMAN n/a 0.51 1.002.4·10-3 2.00 n/a n/a
MTG8R_HUMAN n/a 0.47 1.003.7·10-3 2.50 n/a n/a
IKZF2_HUMAN -1.12 1.89 1.003.8·10-3 1.00 n/a n/a
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Motif analysis

TAL1_HUMAN Weak Concordant
TAL1_HUMAN pic

Genetic associations

EMBL-EBI mean corpuscular hemoglobin,  mean corpuscular volume,  red blood cell count
GRASP hdl cholesterol,  hypertriglyceridemia,  prostate cancer,  serum creatinine,  systolic blood pressure (sbp)
GTEx eQTL Nerve_Tibial,  Whole_Blood

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