rs4970401 chr1:1065797 G>C
- Sequence
gattgacaaggtgaagcaagtcac[G/C]tgatcacaggacagcgggcccttc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ILF3_HUMAN MNT_HUMAN MGAP_HUMAN MTG16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ILF3_HUMAN | 3.02 | -2.64 | 1.00 | n/a | n/a | |||
| MNT_HUMAN | 2.21 | -0.48 | 1.00 | -4.05 | Concordant | |||
| MGAP_HUMAN | 2.81 | -4.81 | 1.50 | -2.29 | Concordant | |||
| MTG16_HUMAN | 2.11 | -1.78 | 1.00 | n/a | n/a | |||
| BCOR_HUMAN | 2.67 | -2.54 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood