rs4993565 chr1:11909936 A>G
- Sequence
agagaaactagagtaagaacttcg[A/G]tgagtggcactcagttctcaggta
- ASB in cell types
- HCT-116 (colon carcinoma) HeLa (cervical adenocarcinoma) SET2 (Adult acute megakaryoblastic leukemia, Homo Sapiens) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- MED26_HUMAN ELL2_HUMAN STAT1_HUMAN MBD4_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MED26_HUMAN | 3.22 | -4.89 | 1.50 | n/a | n/a | |||
| ELL2_HUMAN | 2.62 | n/a | 2.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.74 | -0.59 | 2.33 | n/a | No Hit | |||
| MBD4_HUMAN | 2.65 | 0.20 | 1.00 | n/a | n/a | |||
| TP53B_HUMAN | 1.95 | -0.79 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood