rs539078663 chr2:11864032 T>C
- Sequence
tggagggctcttttttctttcttt[T/C]ttttttttttttccttttctttct
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.35 | 1.10 | 1.30 | n/a | No Hit | |||
| STAG1_HUMAN | 2.00 | 2.01 | 1.06 | n/a | n/a | |||
| SMC3_HUMAN | -0.24 | 2.11 | 1.00 | n/a | n/a |
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