rs5402 chr3:171009950 T>A
- Sequence
tgtgtgtgtgtgtgtgtgtgtgtg[T/A]gacttaccacaatatagtcctgat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN ATF7_HUMAN MEF2B_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 3.95 | -4.09 | 1.00 | n/a | n/a | |||
| ATF7_HUMAN | 3.19 | -2.99 | 1.00 | n/a | No Hit | |||
| MEF2B_HUMAN | 2.98 | n/a | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | 2.47 | n/a | 1.00 | -0.50 | Weak Concordant |
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Motif analysis
