rs540774479 chr2:72367944 T>G
- Sequence
acaggccaacatgctctgcggtct[T/G]gagtaaacttgaaagacagtctag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN NFIB_HUMAN RUNX2_HUMAN ZN217_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 3.35 | n/a | 1.50 | -2.27 | Concordant | |||
| NFIB_HUMAN | 1.31 | -1.02 | 1.00 | n/a | No Hit | |||
| RUNX2_HUMAN | 2.45 | n/a | 2.00 | 1.54 | Weak Discordant | |||
| ZN217_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
