rs542255078 chr5:77645661 G>A
- Sequence
aggggactcgggcccgccccgccc[G/A]gcccccagggggcgcagcgcccgc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.70 | -0.26 | 1.19 | -1.84 | Weak Concordant | |||
| STAG1_HUMAN | 0.91 | -0.71 | 1.00 | n/a | n/a |
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Motif analysis
