rs546481 chr1:234724136 G>A
- Sequence
agagagagagagagagaaatggag[G/A]gagagggagggaggaagggaggag
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- ZN444_HUMAN ZN596_HUMAN ANDR_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN444_HUMAN | 1.75 | n/a | 2.00 | -0.71 | Weak Concordant | |||
| ZN596_HUMAN | n/a | 0.91 | 3.00 | n/a | n/a | |||
| ANDR_HUMAN | 3.19 | n/a | 2.00 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.01 | 1.35 | 2.35 | n/a | n/a | |||
| ZBT7A_HUMAN | n/a | 1.86 | 3.00 | n/a | No Hit |
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Motif analysis
