rs550129626 chr11:95545309 G>A
- Sequence
tatacactctaggactggagaaac[G/A]gccactaggtgggttcctgaacct
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.86 | -3.60 | 1.00 | -1.13 | Weak Concordant | |||
| STAG1_HUMAN | 2.81 | -2.61 | 1.00 | n/a | n/a |
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Motif analysis
