rs552834942 chr19:46009833 T>C
- Sequence
tgtgtgtatgtgtgtgtgtgtgtg[T/C]gtgtgcgcgcgcgtttgctctgtc
- ASB in cell types
- pancreas epithelial cell of prostate K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.08 | -0.13 | 2.37 | n/a | No Hit | |||
| NRF1_HUMAN | n/a | 1.19 | 6.00 | 0.23 | Weak Concordant |
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Motif analysis
