rs555615570 chr5:109689433 C>A
- Sequence
attgacccagcggctgctgcgccg[C/A]cgctgtctcctcctgctcgtggcg
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) GM18486 (Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) Kelly (neuroblastoma)
- ASB for transcription factors
- BRD2_HUMAN ANDR_HUMAN MYCN_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | -0.18 | 1.55 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.38 | 0.03 | 1.83 | n/a | No Hit | |||
| MYCN_HUMAN | -0.61 | 1.16 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | 1.41 | -0.18 | 1.20 | n/a | n/a | |||
| ETS1_HUMAN | -0.47 | 1.79 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Testis, Thyroid, Whole_Blood