rs55633489 chr4:6987018 C>A
- Sequence
tttaaggcagaagctggctctccg[C/A]ctgtcggcgcgcgtccccggtgtt
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) GM18486 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.19 | -0.80 | 1.30 | -2.47 | Concordant | |||
| ANDR_HUMAN | 3.12 | n/a | 1.61 | n/a | No Hit |
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Motif analysis
