rs55634054 chr7:28360897 G>A
- Sequence
gtcagtgattctccactgggggaa[G/A]ctttgtttgaccccagggatattg
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) HUES64 (embryonic stem cells)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.59 | 0.49 | 1.07 | n/a | n/a | |||
| CTCF_HUMAN | 1.31 | 0.34 | 1.34 | -0.96 | Weak Concordant | |||
| RAD21_HUMAN | 1.48 | -0.82 | 1.00 | n/a | n/a |
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Motif analysis
